Two words- muriatic acid. This is basically a really cheap form of HCL. I will not allow a container of this stuff to be opened anywhere within the four walls of my shop, or I will be cleaning rust off from anything iron based at surprising distances from the acid. FeCl is essentially very diluted muriatic that has been supersaturated with dissolved iron, but is much easier to neutralize. I don't believe I have ever used muriatic when I didn't have some level of your problem. Here is the real issue with HCL based etchants- yes they are an acid, so you must neutralize them with a strong base solution, but this does not deal with the residual chlorine atoms still covering your blade, and that is why heavy rinsing and cleansing is necessary as well.
If you are using muriatic, which I have never gotten a consistent etch from without pitting or spotting, you will need to rinse well and then neutralize, then rinse and clean some more. I have used muriatic for topography and texturing of the steel, to be followed with coloring or patination for the final finish. When I do, I take it from the acid (which is outside) and immediately rinse. I then will scrub with baking soda or ammonia, and then clean with TSP, followed with water. I would wait until you see that it no longer wants to turn brown on you before sealing the problem in with oils or waxes, that way you can "rinse and repeat" again with more ease.