Maybe I'm wrong here, but it seems you have the idea that in order to use JB weld, there has to be a "gap".... no. Whatever is used, whether it be solder, epoxy, JB weld, etc. it is nothing more than a moisture seal. If something must be used to "attach" a guard, then the guard fit is not tight enough.
All too often folks think inside the box.....when thinking "outside the box" is called for...... for example, on hidden tang blades/guards, I make the hole in the guard material tapered, with the smaller portion towards what will be the front of the guard. I file/fit the guard to within about 1/2" of the blade shoulders, then press fit it from there. IF the guard material is softer than the tang/blade (as is generally the case), the guard material will deform to exactly match every little contour. Then I "tap" the guard back off, finish the face, and IF using JB weld, put in in from the back side, once the guard is in it's final position......absolutely none of the JB weld shows. In many cases I use nothing on the guard joint...but let it fill with acraglass when "gluing" on the handle material. For the most part, the guard joints are so tight that even the acraglass does not seep through the joint.....but does fill to the front of the guard/blade joint.
The point being that it's all about taking the time/effort to ensure that guard fit is as perfect as you can make it.....at least on the front, where the blade/guard joint is visible.
OK, not that we've covered the "guard fit" thing, I agree with Doug on ways to clean up things. IF you think your going to have a "seam" of visible JB weld, just make sure it's even and equal ALL the way around the front of the blade/guard joint.